Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016788: Corynebacterium diphtheriae HC04 chromosome, complete genome

NCBI: NC_016788

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
152735155104223692Island text1.8887134.162254.1174Neighbours14BLASTN+527351.gbk
265517568087125697Island text1.7500739.736834.852Neighbours112BLASTN+655175.gbk
31214026*128332069295Island text1.8817838.819340.2167Neighbours17BLASTN+1214026.gbk
41286974130559918626Island text1.8682436.80547.3168Neighbours17BLASTN1286974.gbk
51315877*133949123615Island text1.6409434.352930.9855Neighbours17BLASTN1315877.gbk
61349500*137009920600Island text1.580834.14440.3703Neighbours17BLASTN+1349500.gbk
71376000*143182855829Island text1.762735.89536.4423Neighbours17BLASTN+1376000.gbk
81445705*146410918405Island text1.7288935.201638.3957Neighbours17BLASTN+1445705.gbk
91509943*153355423612Island text1.8142734.700830.583Neighbours17BLASTN+1509943.gbk
101609011163243923429Island text1.681934.320327.4485Neighbours171609011.gbk
111730458175093020473Island text1.6609334.17536.9793Neighbours13BLASTN+1730458.gbk
121785287*180486619580Island text1.4547534.788438.2507BLASTN+1785287.gbk
132007721*203151023790Island text1.6596635.905946.2648BLASTN2007721.gbk
142054739*207852823790Island text1.5617135.636634.4561BLASTN2054739.gbk
152115428213422618799Island text1.958637.593238.2434Neighbours14BLASTN2115428.gbk
162265792*228888423093Island text1.7907237.933738.4188Neighbours17BLASTN+2265792.gbk