Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016787: Corynebacterium diphtheriae HC03 chromosome, complete genome

NCBI: NC_016787

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1135677*16069025014Island text2.4717235.283158.1Neighbours14BLASTN+135677.gbk
273368575632722643Island text2.128637.537343.826Neighbours11BLASTN+733685.gbk
31207488*123619828711Island text1.5086133.854830.3569Neighbours17BLASTN+1207488.gbk
41240000127231032311Island text1.8447536.431947.1685Neighbours17BLASTN+1240000.gbk
51276983*132314846166Island text1.6151334.333436.5027Neighbours17BLASTN1276983.gbk
61350676*142526074585Island text1.6723933.835728.5688Neighbours17BLASTN+1350676.gbk
71441350*146143320084Island text1.5652233.783247.124Neighbours17BLASTN+1441350.gbk
81509831*153749527665Island text1.7622334.559232.1442Neighbours17BLASTN+1509831.gbk
91605536162817222637Island text1.7620934.840227.7128Neighbours171605536.gbk
101726978174649619519Island text1.7730636.315437.9843Neighbours14BLASTN+1726978.gbk
111782951*180391220962Island text1.4790135.524140.5835Neighbours19BLASTN+1782951.gbk
122009991203114921159Island text1.510435.244443.8239BLASTN2009991.gbk
132245000*226506620067Island text1.5320435.181633.8368Neighbours11BLASTN+2245000.gbk