Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016786: Corynebacterium diphtheriae HC01 chromosome, complete genome

NCBI: NC_016786

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1540007619622197Island text1.6058934.390242.2707BLASTN+54000.gbk
253353755515221616Island text1.5755233.004952.0465Neighbours14BLASTN+533537.gbk
372000074250322504Island text1.5141634.222430.4576Neighbours11BLASTN+720000.gbk
41079000109800419005Island text1.531434.478432.8237Neighbours11BLASTN+1079000.gbk
51218032*124461126580Island text1.8046236.556245.5926Neighbours17BLASTN+1218032.gbk
61251765128509933335Island text1.6025233.695631.1361Neighbours17BLASTN+1251765.gbk
71293421*130859715177Island text1.6603234.998129.177Neighbours17BLASTN1293421.gbk
81316436*134327726842Island text1.7269333.360339.1247Neighbours17BLASTN1316436.gbk
91359064*145767298609Island text1.7909535.511934.2678Neighbours17BLASTN+1359064.gbk
101519481*153878719307Island text1.7662433.93133.6378Neighbours17BLASTN+1519481.gbk
111751204177072219519Island text1.6822233.757937.4041Neighbours14BLASTN+1751204.gbk
122017267203957222306Island text1.6366234.045247.2916BLASTN+2017267.gbk
132059564208277523212Island text1.881534.362854.5621Neighbours14BLASTN2059564.gbk
142199500*221885219353Island text1.8157334.14432.3913BLASTN2199500.gbk
152235731226283227102Island text1.8397934.110554.7631BLASTN2235731.gbk