Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016785: Corynebacterium diphtheriae CDCE 8392 chromosome, complete genome

NCBI: NC_016785

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1161498*18570524208Island text2.0482436.29855.3696Neighbours13BLASTN+161498.gbk
21167057118609419038Island text1.8872637.29445.7851Neighbours17BLASTN+1167057.gbk
31193471*122819134721Island text1.7890233.466136.3808Neighbours17BLASTN+1193471.gbk
41233384126367830295Island text1.6711434.9832.8199Neighbours17BLASTN+1233384.gbk
51270295*129021419920Island text1.7323835.292727.9912Neighbours17BLASTN1270295.gbk
61297208131658319376Island text1.5788233.99242.2859Neighbours17BLASTN1297208.gbk
71321700*135248230783Island text1.6632333.244230.5823Neighbours17BLASTN+1321700.gbk
81357500*141183654337Island text1.7275534.607424.7216Neighbours17BLASTN+1357500.gbk
91407892*143738929498Island text1.7446234.189129.1252Neighbours17BLASTN+1407892.gbk
101586546161098824443Island text1.7462532.967542.9894Neighbours171586546.gbk
111989695201209922405Island text1.4596936.113835.4854BLASTN1989695.gbk
122215732*224162925898Island text1.8306129.775754.0322Neighbours14BLASTN2215732.gbk