Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016783: Corynebacterium diphtheriae INCA 402 chromosome, complete genome

NCBI: NC_016783

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120106622757626511Island text2.0033341.802939.7324Neighbours14BLASTN+201066.gbk
242916245265523494Island text1.7502533.00139.4019BLASTN+429162.gbk
353771756010622390Island text1.6096432.870350.938Neighbours14BLASTN+537717.gbk
41169821119959929779Island text1.7112435.236938.9502Neighbours17BLASTN+1169821.gbk
51216708123561518908Island text1.9213136.425745.0672Neighbours17BLASTN+1216708.gbk
61239293*126672027428Island text1.6838833.715330.5518Neighbours17BLASTN+1239293.gbk
71274000131465740658Island text1.7490535.28729.7458Neighbours17BLASTN+1274000.gbk
81313008*135809945092Island text1.7281535.622429.4435Neighbours17BLASTN1313008.gbk
91374464*139517920716Island text1.7165534.917645.3781Neighbours17BLASTN1374464.gbk
101397975*147798580011Island text1.6788335.909432.949Neighbours17BLASTN+1397975.gbk
111636820166025123432Island text1.9005934.678135.4536Neighbours171636820.gbk
121758319178106622748Island text1.4803534.423638.7928Neighbours13BLASTN+1758319.gbk
132212341*223678024440Island text1.7281535.03342.6742BLASTN2212341.gbk