Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016782: Corynebacterium diphtheriae 241 chromosome, complete genome

NCBI: NC_016782

Host Lineage: Corynebacterium diphtheriae; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is the best known and most widely studied species of the genus. It is the causal agent of the disease diphtheria, a deadly infectious disease spreading from person to person by respiratory droplets from the throat through coughing and sneezing. In the course of infection, the bacteria invade and colonize tissues of the upper respiratory tract, proliferate and produce exotoxin that inhibits protein synthesis and causes local lesions and systemic degenerative changes in the heart, muscles, peripheral nerves, liver and other vital organs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1565007559919100Island text1.5832335.832638.2263BLASTN+56500.gbk
2152764*17335720594Island text2.6408135.181654.9336Neighbours11BLASTN+152764.gbk
353741255603518624Island text1.5838231.809351.3461Neighbours14BLASTN+537412.gbk
472000074436224363Island text1.5212634.370231.1309Neighbours11BLASTN+720000.gbk
51076619109501818400Island text1.5039935.159338.0071Neighbours11BLASTN+1076619.gbk
61227246*124677319528Island text1.7602836.056443.5447Neighbours17BLASTN+1227246.gbk
71251796128509933304Island text1.5642634.342626.3704Neighbours17BLASTN+1251796.gbk
81293452*130862815177Island text1.6466434.699729.4199Neighbours17BLASTN1293452.gbk
91316467*134330726841Island text1.7139832.851639.5166Neighbours17BLASTN1316467.gbk
101359000137931020311Island text1.7780435.308234.1748Neighbours17BLASTN+1359000.gbk
111385800*143678650987Island text1.6633732.769936.4052Neighbours17BLASTN+1385800.gbk
121450674*146909918426Island text1.7444133.638129.2128Neighbours17BLASTN+1450674.gbk
131520324*153912518802Island text1.735534.000125.2284Neighbours17BLASTN+1520324.gbk
141745374177012224749Island text1.7467333.467135.8204Neighbours13BLASTN+1745374.gbk
152058967208217823212Island text1.6408333.00442.5204Neighbours14BLASTN2058967.gbk
162088858*210952620669Island text1.87232.979753.0759Neighbours14BLASTN+2088858.gbk
172199000*221825319254Island text1.6456637.408846.181BLASTN2199000.gbk
182235000225809923100Island text1.9826734.475343.5364BLASTN2235000.gbk