Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016781: Corynebacterium pseudotuberculosis 3/99-5 chromosome, complete

NCBI: NC_016781

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1844613*88979345181Island text1.5164637.324747.0733Neighbours17BLASTN+844613.gbk
21039716*107452534810Island text1.6317235.849647.2107Neighbours17BLASTN+1039716.gbk
31169632119341623785Island text1.4978235.913233.646Neighbours17BLASTN+1169632.gbk
41261300*128609924800Island text1.6017437.010146.352Neighbours17BLASTN1261300.gbk
51297782*132202224241Island text1.6574236.535750.2289Neighbours17BLASTN1297782.gbk
61327516*134838020865Island text1.5243835.315334.1556Neighbours17BLASTN1327516.gbk
71361704*138008018377Island text1.5015235.779442.2768Neighbours17BLASTN+1361704.gbk
81408235*143959931365Island text1.5514134.853844.2834Neighbours17BLASTN1408235.gbk
92035543*206232026778Island text1.8196639.812752.2722Neighbours17BLASTN+2035543.gbk