Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016779: Bacillus cereus F837/76 chromosome, complete genome

NCBI: NC_016779

Host Lineage: Bacillus cereus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism is a soil-dwelling opportunistic pathogen that causes food poisoning in infected individuals. The rapid onset is characterized by nausea and vomiting while the late onset is characterized by diarrhea and abdominal pain. The emetic disease is caused by a small stable dodecadepsipeptide cerulide whereas the diarrheal disease is caused by a heat labile enterotoxin. Some strains produce a potent cytotoxin that forms a pore in the membrane of eukaryotic cells and causes necrotic enteritis (death of intestinal epithelial cells) while the unique tripartite membrane lytic toxin hemolysin BL contributes to the diarrheal disease and destructive infections of the eye.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1312500*33057718078Island text2.9446528.376845.6384Neighbours21BLASTN+312500.gbk
265756867589418327Island text3.0155426.644944.4107Neighbours21BLASTN+657568.gbk
3991298*101133020033Island text2.0136925.057436.5231Neighbours21BLASTN+991298.gbk
41189405121230122897Island text3.549727.752746.412Neighbours21BLASTN1189405.gbk
51321723134174320021Island text3.7885431.988749.163Neighbours21BLASTN1321723.gbk
61688946171240823463Island text1.6647123.410133.5181Neighbours21BLASTN+1688946.gbk
72693790271507721288Island text3.7799630.006748.5199Neighbours21BLASTN2693790.gbk
83418538*344202623489Island text1.6370323.340230.6432Neighbours21BLASTN3418538.gbk
93579743*360221222470Island text3.0196529.017248.2763Neighbours21BLASTN3579743.gbk
103621973*364009918127Island text1.6026323.834241.1033Neighbours21BLASTN3621973.gbk
113660000*367853418535Island text1.345823.674623.4742Neighbours21BLASTN3660000.gbk
123913627393471921093Island text1.7308223.635141.288Neighbours21BLASTN3913627.gbk
134039103*405858119479Island text1.5836821.789932.3547Neighbours21BLASTN4039103.gbk
144217171*423673419564Island text1.6308123.192333.0491Neighbours21BLASTN4217171.gbk
154361140438460323464Island text1.4791823.595632.5557Neighbours21BLASTN4361140.gbk
164475425*450116325739Island text1.7253725.372431.9786Neighbours21BLASTN+4475425.gbk
174588000*461106923070Island text1.9757922.94539.4384Neighbours21BLASTN4588000.gbk
184645155*467022925075Island text1.8345223.544925.7766Neighbours21BLASTN+4645155.gbk
194825599*484849622898Island text1.5987823.90231.8492Neighbours21BLASTN4825599.gbk
204864056*489887934824Island text1.6612223.440535.6438Neighbours21BLASTN+4864056.gbk
214969626*499262222997Island text1.6329723.622931.2503Neighbours21BLASTN+4969626.gbk
225009320*506548956170Island text1.6112622.969433.646Neighbours21BLASTN+5009320.gbk
235079460*509851019051Island text1.7163325.705943.3613Neighbours21BLASTN+5079460.gbk
245189139*521530926171Island text1.5925322.996733.3902Neighbours21BLASTN5189139.gbk