Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016771: Bacillus cereus NC7401, complete genome

NCBI: NC_016771

Host Lineage: Bacillus cereus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism is a soil-dwelling opportunistic pathogen that causes food poisoning in infected individuals. The rapid onset is characterized by nausea and vomiting while the late onset is characterized by diarrhea and abdominal pain. The emetic disease is caused by a small stable dodecadepsipeptide cerulide whereas the diarrheal disease is caused by a heat labile enterotoxin. Some strains produce a potent cytotoxin that forms a pore in the membrane of eukaryotic cells and causes necrotic enteritis (death of intestinal epithelial cells) while the unique tripartite membrane lytic toxin hemolysin BL contributes to the diarrheal disease and destructive infections of the eye.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
170190972431922411Island text3.2548428.853847.2736Neighbours21BLASTN+701909.gbk
21397292*142033323042Island text3.1598827.069646.0603Neighbours21BLASTN1397292.gbk
31575000159397518976Island text1.6056527.801736.0145BLASTN1575000.gbk
42039195205809918905Island text3.1514628.524743.0083Neighbours21BLASTN+2039195.gbk
52933886295618522300Island text4.9427538.345156.0421Neighbours21BLASTN+2933886.gbk
63097173*311761520443Island text1.6398625.009133.7374Neighbours21BLASTN3097173.gbk
73386660341073024071Island text2.0692423.595640.6992Neighbours21BLASTN3386660.gbk
83520522353979819277Island text1.8070523.09441.1926Neighbours21BLASTN3520522.gbk
93555506*357423218727Island text1.6205121.941933.646Neighbours21BLASTN3555506.gbk
103599170*361768318514Island text2.062223.038338.1106Neighbours21BLASTN3599170.gbk
113633327*365328419958Island text1.6549122.595531.1731Neighbours21BLASTN3633327.gbk
123665773*368835722585Island text1.5224935.609249.2285Neighbours21BLASTN3665773.gbk
134059445*408317223728Island text1.5409129.425431.6716Neighbours21BLASTN4059445.gbk
144195888*421870322816Island text1.5312723.087937.6538Neighbours21BLASTN4195888.gbk
154333000435076417765Island text1.5470423.112233.9018Neighbours21BLASTN4333000.gbk
164445815*447404028226Island text1.9229323.47738.135Neighbours21BLASTN4445815.gbk
174569941458809918159Island text1.8096623.185226.8486Neighbours21BLASTN4569941.gbk
184692772471541622645Island text1.7731821.668336.7463Neighbours21BLASTN+4692772.gbk
194821000*484759926600Island text1.6533723.404133.5546Neighbours21BLASTN+4821000.gbk
204859040487976320724Island text1.5503323.771928.1825BLASTN+4859040.gbk
214882886*489584012955Island text1.6133923.030233.8896Neighbours21BLASTN+4882886.gbk
224962795498059917805Island text1.8279130.390147.1674Neighbours21BLASTN+4962795.gbk
235038435*505961521181Island text1.5402923.834734.5322Neighbours21BLASTN5038435.gbk
245191937*521908027144Island text3.8281337.750544.3727Neighbours21BLASTN5191937.gbk