Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016751: Marinitoga piezophila KA3 chromosome, complete genome

NCBI: NC_016751

Host Lineage: Marinitoga piezophila; Marinitoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Country: Pacific Ocean; Environment: Deep sea, Hydrothermal vent, Marine; Isolation: deep-sea hydrothermal vent chimney; Temp: Thermophile; Temp: 65C. Marinitoga piezophila was isolated from a deep-sea hydrothermal vent chimney at a depth of 2630 meters on the East-Pacific Rise. This organism grows best at a pressure of 40 MPa. This organism is a member of the Thermatogales and has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114223716633924103Island text1.7851117.708627.5978Neighbours21BLASTN142237.gbk
2469289*48874919461Island text1.6755916.628223.8153Neighbours21BLASTN+469289.gbk
3857359*89178134423Island text1.7757616.717327.8597Neighbours21BLASTN+857359.gbk
41227495*126249435000Island text2.8217424.294842.7041Neighbours21BLASTN1227495.gbk
51299738*132316323426Island text3.6183821.222240.086Neighbours21BLASTN1299738.gbk
61524848*154895124104Island text3.2366319.736938.6221Neighbours21BLASTN+1524848.gbk
71604048*162317519128Island text2.2034715.053530.5275Neighbours21BLASTN1604048.gbk
81623756*164741323658Island text2.7458426.160347.3259Neighbours21BLASTN1623756.gbk
91700164*172464924486Island text1.4153116.366730.9234Neighbours21BLASTN+1700164.gbk
101740265176416623902Island text1.5739615.378822.3718Neighbours21BLASTN1740265.gbk
111776669*180251125843Island text1.9214116.61630.3691Neighbours21BLASTN+1776669.gbk
121979201200240023200Island text2.6325214.78335.8144Neighbours21BLASTN+1979201.gbk
132044379207006025682Island text1.8286418.551431.5524Neighbours21BLASTN+2044379.gbk