Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016749: Streptococcus macedonicus ACA-DC 198, complete genome

NCBI: NC_016749

Host Lineage: Streptococcus macedonicus; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus macedonicus (strain ACA-DC 198) is a thermophilic, homofermentative, Gram-positive bacterium isolated from a naturally fermented Greek Kasseri cheese. It possesses a food-grade and non-pathogenic status. S.macedonicus are moderately acidifying and proteolytic, and produce bacteriocins as the anti-clostridial lantibiotic macedocin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11371997139668524689Island text3.0337530.943344.4235Neighbours21BLASTN1371997.gbk
21914481194690732427Island text2.8449328.668643.0441BLASTN+1914481.gbk