Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016646: Pseudovibrio sp. FO-BEG1 plasmid unnamed, complete sequence

NCBI: NC_016646

Host Lineage: Pseudovibrio; Pseudovibrio; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Country: USA, Florida; Environment: marine water; Temp: 28C; Isolation: black band-diseased coral. Isolated with Beggiatoa sp. from a black band diseased coral; is available as an axenic culture; metabolically versatile, facultative oligotroph.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127581829884623029Island text1.6952432.808133.4217Neighbours113BLASTN275818.gbk