Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016645: Pyrobaculum sp. 1860 chromosome, complete genome

NCBI: NC_016645

Host Lineage: Pyrobaculum; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Pyrobaculum 1860 is a hyperthermophilic crenarchaeon. Location: Russia: Kamchatka; Source: Lake Fumarolic in the Uzon Caldera. Dissimilatory sulfate reduction.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120199*4009919901Island text1.6048532.479333.9652Neighbours61BLASTN20199.gbk
224500027125326254Island text2.0552534.343943.5632Neighbours61BLASTN245000.gbk
3279232*30622626995Island text1.7078537.65252.3541Neighbours61BLASTN+279232.gbk
4343946*36631222367Island text1.5138934.032547.7768Neighbours61BLASTN343946.gbk
5383763*40186218100Island text1.4821334.028537.063Neighbours61BLASTN383763.gbk
663398865409620109Island text1.5125131.833743.7447Neighbours61BLASTN+633988.gbk
774379276209918308Island text1.7832730.362454.5194Neighbours61BLASTN+743792.gbk
879700082032023321Island text2.1092336.832347.6943Neighbours61797000.gbk
9985802*100480919008Island text1.7901632.3251.4557+985802.gbk
101059482*110145641975Island text1.498235.311328.8116Neighbours61BLASTN+1059482.gbk
111168000119117523176Island text2.58836.450239.3307BLASTN1168000.gbk
121544000156615322154Island text1.3659133.858243.6655Neighbours611544000.gbk
131677703170452526823Island text5.0191154.378136.4336BLASTN1677703.gbk
141838405*189118352779Island text1.8352935.35935.2595Neighbours61BLASTN+1838405.gbk
151909507193393724431Island text1.6154234.111740.5254Neighbours61BLASTN1909507.gbk
162387023*240816921147Island text1.7557437.939531.8414Neighbours61BLASTN+2387023.gbk
172438033246316425132Island text1.5482533.481336.8437Neighbours61BLASTN2438033.gbk