Pre_GI: Island

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016645: Pyrobaculum sp. 1860 chromosome, complete genome

NCBI: NC_016645

Host Lineage: Pyrobaculum; Pyrobaculum; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Pyrobaculum 1860 is a hyperthermophilic crenarchaeon. Location: Russia: Kamchatka; Source: Lake Fumarolic in the Uzon Caldera. Dissimilatory sulfate reduction.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#	Start	End	Length	Island Text	GRV_RV	D	PS	Neighbours	Cluster	Sub Cluster	BLASTN	Key Word Confirmation	Download Island
1	20199*	40099	19901	Island text	1.60485	32.4793	33.9652	Neighbours	6	1	BLASTN		20199.gbk
2	245000	271253	26254	Island text	2.05525	34.3439	43.5632	Neighbours	6	1	BLASTN		245000.gbk
3	279232*	306226	26995	Island text	1.70785	37.652	52.3541	Neighbours	6	1	BLASTN	+	279232.gbk
4	343946*	366312	22367	Island text	1.51389	34.0325	47.7768	Neighbours	6	1	BLASTN		343946.gbk
5	383763*	401862	18100	Island text	1.48213	34.0285	37.063	Neighbours	6	1	BLASTN		383763.gbk
6	633988	654096	20109	Island text	1.51251	31.8337	43.7447	Neighbours	6	1	BLASTN	+	633988.gbk
7	743792	762099	18308	Island text	1.78327	30.3624	54.5194	Neighbours	6	1	BLASTN	+	743792.gbk
8	797000	820320	23321	Island text	2.10923	36.8323	47.6943	Neighbours	6	1			797000.gbk
9	985802*	1004809	19008	Island text	1.79016	32.32	51.4557					+	985802.gbk
10	1059482*	1101456	41975	Island text	1.4982	35.3113	28.8116	Neighbours	6	1	BLASTN	+	1059482.gbk
11	1168000	1191175	23176	Island text	2.588	36.4502	39.3307				BLASTN		1168000.gbk
12	1544000	1566153	22154	Island text	1.36591	33.8582	43.6655	Neighbours	6	1			1544000.gbk
13	1677703	1704525	26823	Island text	5.01911	54.3781	36.4336				BLASTN		1677703.gbk
14	1838405*	1891183	52779	Island text	1.83529	35.359	35.2595	Neighbours	6	1	BLASTN	+	1838405.gbk
15	1909507	1933937	24431	Island text	1.61542	34.1117	40.5254	Neighbours	6	1	BLASTN		1909507.gbk
16	2387023*	2408169	21147	Island text	1.75574	37.9395	31.8414	Neighbours	6	1	BLASTN	+	2387023.gbk
17	2438033	2463164	25132	Island text	1.54825	33.4813	36.8437	Neighbours	6	1	BLASTN		2438033.gbk

Pre_GI Island