Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016642: Pseudovibrio sp. FO-BEG1 chromosome, complete genome

NCBI: NC_016642

Host Lineage: Pseudovibrio; Pseudovibrio; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Country: USA, Florida; Environment: marine water; Temp: 28C; Isolation: black band-diseased coral. Isolated with Beggiatoa sp. from a black band diseased coral; is available as an axenic culture; metabolically versatile, facultative oligotroph.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1471656*49279621141Island text1.5904730.466720.2126BLASTN+471656.gbk
275796477761519652Island text1.5484625.069932.9943Neighbours332BLASTN+757964.gbk
3990058*101809928042Island text1.7260832.419946.8475BLASTN990058.gbk
41234500125291718418Island text2.3466736.340327.109Neighbours332BLASTN+1234500.gbk
51913432*194934035909Island text1.5017929.401815.4465Neighbours13BLASTN+1913432.gbk
61990684201284222159Island text1.7914631.490543.2784+1990684.gbk
72440070247311633047Island text1.4420227.374923.7137Neighbours332BLASTN+2440070.gbk
82573481259620822728Island text1.5432330.704820.6765BLASTN2573481.gbk
93286654330833021677Island text1.8911935.566821.0702Neighbours113BLASTN+3286654.gbk
103554000*359932745328Island text1.5333628.3552.6861BLASTN+3554000.gbk
114517478453539517918Island text1.5472525.623233.2805Neighbours332BLASTN+4517478.gbk