Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016641: Paenibacillus terrae HPL-003 chromosome, complete genome

NCBI: NC_016641

Host Lineage: Paenibacillus terrae; Paenibacillus; Paenibacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Gram-positive, endospore-forming, xylanase-producing bacterium. Isolated from soil found in forest residue on Gara Mountain. Nitrogen fixation, Methylotroph.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137362340359929977Island text2.0016845.707755.2047Neighbours21BLASTN+373623.gbk
243850046009921600Island text3.0236338.246115.5703Neighbours319BLASTN+438500.gbk
383450085401219513Island text1.8974135.932629.4122Neighbours21BLASTN834500.gbk
4872394*89509922706Island text1.8073741.907851.9643Neighbours37BLASTN872394.gbk
594528496425518972Island text1.575138.559448.3357Neighbours37BLASTN945284.gbk
61006662103052723866Island text1.7337535.967954.0185Neighbours37BLASTN+1006662.gbk
71085862111009924238Island text2.133334.717530.2047Neighbours37BLASTN+1085862.gbk
81148220116988021661Island text2.0402835.608326.275Neighbours21BLASTN+1148220.gbk
91369424139231922896Island text1.6244633.365825.9898Neighbours23BLASTN+1369424.gbk
101530905*156517334269Island text1.5772535.398448.9398Neighbours37BLASTN+1530905.gbk
111639356*165883919484Island text1.6676438.426743.317Neighbours37BLASTN1639356.gbk
121984206200638922184Island text2.8407436.38239.4316Neighbours23+1984206.gbk
132225779*224828322505Island text2.4380733.952517.091Neighbours315BLASTN+2225779.gbk
142291363231421622854Island text1.9041635.899536.1499Neighbours21BLASTN+2291363.gbk
152394628241794923322Island text1.7506435.06250.539Neighbours21BLASTN+2394628.gbk
162476634250062423991Island text1.5079535.949745.7161Neighbours37BLASTN+2476634.gbk
172587000*261787830879Island text1.7806335.192749.7137Neighbours21BLASTN+2587000.gbk
182618587*264717728591Island text1.8270438.024952.1135Neighbours21BLASTN+2618587.gbk
192700765272829627532Island text2.4653736.667127.9015Neighbours37+2700765.gbk
202735054*275473619683Island text1.9007837.779553.0685Neighbours21BLASTN+2735054.gbk
212773757279931225556Island text1.5418537.256840.6992Neighbours37+2773757.gbk
222815974283940423431Island text1.8696433.998118.7112Neighbours315BLASTN+2815974.gbk
232894899293358338685Island text3.4882537.409413.7214Neighbours24BLASTN+2894899.gbk
242950000297243522436Island text2.1565736.549527.7691Neighbours37BLASTN+2950000.gbk
253058571307713518565Island text1.8116838.737253.7916Neighbours21BLASTN+3058571.gbk
263173250319598622737Island text3.1037437.808932.3536Neighbours37BLASTN+3173250.gbk
273217201*324009922899Island text2.4867236.647422.7326Neighbours23BLASTN3217201.gbk
283272500*329972527226Island text1.6058835.001241.1682Neighbours21BLASTN+3272500.gbk
293711972373420822237Island text2.1681334.966823.6235Neighbours37+3711972.gbk
303772981379859925619Island text1.7673537.467741.8073Neighbours21BLASTN+3772981.gbk
314011000402945218453Island text1.5909734.250433.3171BLASTN+4011000.gbk
324151403417445123049Island text2.4938336.863919.3716Neighbours37+4151403.gbk
334290350*430971419365Island text1.508437.396653.3743Neighbours37BLASTN+4290350.gbk
344653889467668422796Island text1.5465635.035726.8547Neighbours116BLASTN+4653889.gbk
354727000474557718578Island text1.6972436.852241.7994Neighbours21BLASTN4727000.gbk
364853448487626522818Island text2.0736634.791532.3121Neighbours21BLASTN+4853448.gbk
375306000*532981923820Island text2.4799238.20936.989Neighbours37BLASTN+5306000.gbk
385528826*555484226017Island text1.5207835.177554.5803Neighbours37BLASTN+5528826.gbk
395671186570086129676Island text2.0416634.672925.7644Neighbours21BLASTN+5671186.gbk
405729308574756918262Island text1.762736.107728.7307Neighbours23BLASTN+5729308.gbk
415808113584212134009Island text1.7904132.833821.4033Neighbours21BLASTN+5808113.gbk
425877164590059923436Island text1.5267235.463349.0194Neighbours21BLASTN5877164.gbk
435926000*594603420035Island text1.5648439.17829.1144Neighbours37BLASTN5926000.gbk