Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016639: Rickettsia slovaca 13-B chromosome, complete genome

NCBI: NC_016639

Host Lineage: Rickettsia slovaca; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Members of this genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens. In both groups, the bacteria are transmitted via an insect, usually a tick, to a host organism where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1131883683623649Island text2.6255312.062328.9012Neighbours21BLASTN+13188.gbk
2175846*19445818613Island text1.4740213.199223.9676Neighbours21BLASTN175846.gbk
3274157*29870624550Island text1.5326815.868225.6121Neighbours21BLASTN+274157.gbk
4930982*95244021459Island text2.2419314.496928.4421Neighbours21BLASTN930982.gbk
51141924116122519302Island text1.4875915.193325.7644BLASTN1141924.gbk