Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016638: Mycoplasma haemocanis str. Illinois chromosome, complete genome

NCBI: NC_016638

Host Lineage: Mycoplasma haemocanis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Mycoplasma haemocanis has been widely studied due to its role as a veterinary pathogen that usually causes latent infection in the dog until splenectomy or immunosuppression trigger overt disease. The strain Illinois of M. haemocanis is pathogenic to the host; it was harvested from the blood of a naturally infected 8-year-old splenectomized dog and used for this genomic sequencing project.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1206812*22578318972Island text1.6474118.081233.1039Neighbours21206812.gbk
223738326153824156Island text1.5410916.880525.941Neighbours21BLASTN237383.gbk
3429437*45203122595Island text1.5666218.754130.66Neighbours21BLASTN429437.gbk
450592153349327573Island text2.4172919.41334.7055Neighbours21BLASTN505921.gbk
554269256076718076Island text2.5236217.926233.0795Neighbours21542692.gbk
656394458259918656Island text2.352318.44835.3667Neighbours21BLASTN563944.gbk
759990162077720877Island text1.8617118.632729.2474Neighbours21BLASTN599901.gbk
870119171991818728Island text1.5032621.680430.4422Neighbours21701191.gbk
9816643*85894642304Island text1.5662419.719237.1562Neighbours21BLASTN816643.gbk