Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016633: Sphaerochaeta pleomorpha str. Grapes chromosome, complete genome

NCBI: NC_016633

Host Lineage: Sphaerochaeta pleomorpha; Sphaerochaeta; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Hot spring, Marine; Isolation: Marine hot spring; USSR, Shiashkoten island; Temp: Hyperthermophile; Temp: 65C. This is a genus of spirochetes with a flexible, undulating, spiral-shaped body.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114000*3822624227Island text1.9730728.05220.709Neighbours312BLASTN+14000.gbk
2289500*30789018391Island text1.8727227.5931.971Neighbours21BLASTN+289500.gbk
3541559*56120319645Island text1.6084127.869631.8187Neighbours21BLASTN+541559.gbk
41130705114936818664Island text2.4203641.85641.2582Neighbours376BLASTN+1130705.gbk
51353458*137843524978Island text2.0163339.8843.1379Neighbours328BLASTN1353458.gbk
61798758182659927842Island text1.4808932.818635.2357Neighbours328BLASTN1798758.gbk
71898234191699118758Island text1.9802731.502119.279Neighbours328BLASTN+1898234.gbk
82239413*226884229430Island text2.0747631.40526.0218Neighbours33+2239413.gbk
92655811267495319143Island text1.6535327.454221.449Neighbours318BLASTN+2655811.gbk
102688144*271181623673Island text1.6645436.004843.3735Neighbours32BLASTN+2688144.gbk
113069518*313959970082Island text2.5678745.774846.7878Neighbours33BLASTN+3069518.gbk
123402242*342638524144Island text1.5697827.401529.1144Neighbours32BLASTN+3402242.gbk