Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016632: Serratia symbiotica str. 'Cinara cedri' chromosome, complete

NCBI: NC_016632

Host Lineage: Serratia symbiotica; Serratia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: An endosymbiont of the aphid Cinara cedri.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111809918099Island text1.6001519.582935.0408Neighbours314BLASTN+1.gbk
274569*9309918531Island text2.1973417.327322.9443BLASTN74569.gbk
3120500*14048119982Island text2.1599419.007333.8549Neighbours314BLASTN+120500.gbk
4170000*21672346724Island text1.8596216.8732.8006Neighbours314BLASTN170000.gbk
523050026259932100Island text2.694724.203240.9739BLASTN230500.gbk
628540830809922692Island text1.7873616.068830.9295Neighbours314BLASTN285408.gbk
7398018*42430026283Island text1.4950317.053731.1609Neighbours314BLASTN398018.gbk
8513500*53659923100Island text2.124819.482332.3655BLASTN513500.gbk
983000085209922100Island text1.8587619.273830.0996BLASTN830000.gbk
10951500*96922717728Island text1.741217.856310.5677BLASTN951500.gbk
111049510107409924590Island text1.7327416.722420.5263BLASTN1049510.gbk
121138000*116009922100Island text2.664920.267628.8779Neighbours314BLASTN+1138000.gbk
131278500*129609917600Island text1.770516.485333.3232BLASTN1278500.gbk
141399993142209922107Island text1.9155216.31228.5358BLASTN+1399993.gbk
151496000*151882122822Island text2.4643719.37835.5247BLASTN1496000.gbk
161637500*166365426155Island text1.84917.148925.6725Neighbours314BLASTN1637500.gbk
171695500*171397418475Island text2.954623.27138.312BLASTN1695500.gbk