Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016631: Granulicella mallensis MP5ACTX8 chromosome, complete genome

NCBI: NC_016631

Host Lineage: Granulicella mallensis; Granulicella; Acidobacteriaceae; Acidobacteriales; Acidobacteria; Bacteria

General Information: Acidobacterium is a genus of acidophilic, chemoorganotrophic bacteria containing menaquinone, isolated from acidic mineral environments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1297222*32330026079Island text1.685133.238540.9722Neighbours11BLASTN297222.gbk
277351179227218762Island text2.1313134.06944.6583Neighbours11BLASTN773511.gbk
31117241115164434404Island text1.500232.496439.2557Neighbours111117241.gbk
41329702*135231622615Island text2.0532635.875234.3571BLASTN1329702.gbk
51757788177793220145Island text1.4997130.757532.5496Neighbours11BLASTN1757788.gbk
62051475*207761426140Island text1.5763429.837537.1787BLASTN+2051475.gbk
72112175216709954925Island text2.1330935.101935.1349BLASTN+2112175.gbk
82583762260339619635Island text1.9154336.331636.7956Neighbours11BLASTN+2583762.gbk
92997200*302009922900Island text1.5473228.759533.375BLASTN2997200.gbk
103114000*318620672207Island text1.9564631.710528.6016Neighbours11BLASTN3114000.gbk
113245501326903323533Island text1.7794831.54134.8467Neighbours11BLASTN+3245501.gbk
123434963345293317971Island text1.5588726.781424.0041Neighbours112BLASTN3434963.gbk
133664660*369166727008Island text1.4796529.292319.8258+3664660.gbk
143917253*395764240390Island text1.5250827.623434.9738Neighbours112BLASTN+3917253.gbk
154087085411081223728Island text1.6875929.479225.2449Neighbours11BLASTN4087085.gbk
164113794*416771053917Island text1.4710729.675343.702Neighbours112BLASTN+4113794.gbk
174384251440242518175Island text1.7996634.352426.4237Neighbours11BLASTN+4384251.gbk
184423658445914835491Island text1.7023528.137221.4947Neighbours114423658.gbk
194472987449424321257Island text1.6824431.437550.4623Neighbours114472987.gbk
204530000456445134452Island text1.5740530.506551.7402BLASTN4530000.gbk
214688000471044022441Island text1.6199729.409830.3335Neighbours1124688000.gbk
224731865475479922935Island text1.5111631.772929.3641Neighbours11BLASTN+4731865.gbk
235378810*539923420425Island text1.6049228.741441.3388Neighbours11BLASTN+5378810.gbk
245438477*545878720311Island text1.5438930.53534.9994Neighbours11BLASTN+5438477.gbk
255478098*550292224825Island text1.8563730.25827.3334Neighbours11BLASTN+5478098.gbk
266081384610476323380Island text1.5585431.085827.4577Neighbours11BLASTN6081384.gbk