Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016629: Desulfovibrio africanus str. Walvis Bay chromosome, complete

NCBI: NC_016629

Host Lineage: Desulfovibrio africanus; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Environment: Sea water, Fresh water, Soil; Isolation: marine mud after eruption; Temp: Mesophile; Temp: 30C. Desulfovibrio africanus is a sulfate-reducing bacterium which reduces sulfate to sulfide and is found in soil, freshwater, and saltwater



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1415711*43689721187Island text1.6661122.957239.1156Neighbours11BLASTN+415711.gbk
21111619*114956937951Island text3.4894335.201828.1671Neighbours11BLASTN+1111619.gbk
31175828*119967123844Island text1.4185621.218435.2479Neighbours11BLASTN1175828.gbk
42449731*247219122461Island text1.6194724.822837.6816Neighbours11BLASTN2449731.gbk
52561000*258295021951Island text1.8069224.860837.3784Neighbours11BLASTN+2561000.gbk
62784000*281497330974Island text1.4878523.127425.4294Neighbours11BLASTN+2784000.gbk
72971860*299165619797Island text1.6686725.270523.2557Neighbours11BLASTN2971860.gbk
83254000*327659922600Island text1.8881930.335636.1441Neighbours11BLASTN3254000.gbk
93308329*335499946671Island text1.7037123.427.1263Neighbours11BLASTN+3308329.gbk
103396500*343278436285Island text2.2366626.845237.5259Neighbours11BLASTN3396500.gbk
113496630*352577829149Island text1.6254122.806923.4405Neighbours11BLASTN+3496630.gbk
123543432356213918708Island text1.6298325.702722.0308Neighbours11BLASTN+3543432.gbk
133629848*365100921162Island text1.9362625.681222.4326Neighbours11BLASTN+3629848.gbk
143789554383257443021Island text3.4660738.564227.7342Neighbours11BLASTN+3789554.gbk
153929716394959919884Island text1.675120.814126.7694Neighbours11BLASTN3929716.gbk
164081500410259921100Island text1.9226223.081823.6643Neighbours11BLASTN+4081500.gbk