Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016628: Vibrio furnissii NCTC 11218 chromosome 2, complete sequence

NCBI: NC_016628

Host Lineage: Vibrio furnissii; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio furnissii, formerly Vibrio fluvialis biovar II, is occassionally isolated from diarrheal cases, but it has not been confirmed as the causative agent in most cases. Vibrio furnissii is a widespread, free-living, marine bacterium that is associated with crustacean zoonoses and acute gastroenteritis in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112009920099Island text1.6732336.013539.1582Neighbours42BLASTN1.gbk
2133841*15323219392Island text1.6114331.156826.1359Neighbours42BLASTN+133841.gbk
319300022125928260Island text2.4592541.510721.7548BLASTN193000.gbk
437381539855224738Island text1.7122635.317423.0545BLASTN+373815.gbk
553713757759940463Island text2.5731539.971426.5844Neighbours42BLASTN+537137.gbk
676383379711933287Island text2.7990643.521126.8244Neighbours42BLASTN+763833.gbk
793542096516929750Island text1.7330234.421832.2929Neighbours42BLASTN935420.gbk
81190366*121827327908Island text3.4745642.082521.8589Neighbours44BLASTN+1190366.gbk