Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016627: Clostridium clariflavum DSM 19732 chromosome, complete genome

NCBI: NC_016627

Host Lineage: Clostridium clariflavum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Japan; Isolation: Methanogenic sludge; Temp: Thermophile; Temp: 55C. Clostridium clariflavum is a thermophilic cellulose degrader closely related to C. thermocellum, with equivalent cellulolytic activity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149449751395519459Island text2.0052822.233739.5237Neighbours21BLASTN+494497.gbk
2689406*71092621521Island text1.9719924.025244.5213Neighbours21BLASTN689406.gbk
3762000*78579923800Island text2.2830425.9439.9531Neighbours21BLASTN762000.gbk
4793583*81964026058Island text1.8609527.243424.4918Neighbours21BLASTN+793583.gbk
5841269*86419722929Island text1.5923526.617237.0082Neighbours21BLASTN841269.gbk
61133759115676123003Island text1.6351323.264244.1528Neighbours21BLASTN1133759.gbk
71213357*123812824772Island text1.9461823.911744.64Neighbours21BLASTN1213357.gbk
81342172136126519094Island text1.9235423.220739.408Neighbours21BLASTN1342172.gbk
91452688*147453821851Island text2.0747824.982836.8498Neighbours21BLASTN+1452688.gbk
101485799*153109445296Island text1.8750127.369732.5508Neighbours21BLASTN+1485799.gbk
111723104175980136698Island text2.4104825.560841.3939Neighbours21BLASTN+1723104.gbk
121807866182859920734Island text1.7216125.75330.397Neighbours21BLASTN+1807866.gbk
131960097198346023364Island text1.9772126.971927.3497Neighbours21BLASTN+1960097.gbk
142023750*204932625577Island text1.9246320.902236.8376Neighbours21BLASTN2023750.gbk
152524307*255073126425Island text1.5743624.969840.0151Neighbours37BLASTN2524307.gbk
162593242*261259919358Island text3.0222530.629948.3022Neighbours37BLASTN+2593242.gbk
172637226265559918374Island text1.6669925.101338.6771Neighbours21BLASTN+2637226.gbk
182664419270673242314Island text2.6541423.869441.4301Neighbours21BLASTN+2664419.gbk
192723678*274652522848Island text1.8308922.628938.9329Neighbours21BLASTN2723678.gbk
202799453*283352534073Island text1.9445122.375637.2943Neighbours21BLASTN2799453.gbk
212870900288968818789Island text2.3838524.259843.5701Neighbours21BLASTN+2870900.gbk
223125169315159926431Island text2.6731724.347243.1692Neighbours21BLASTN+3125169.gbk
233158353318103322681Island text1.6308725.015537.909Neighbours21BLASTN+3158353.gbk
243205333*325169746365Island text1.6992724.000540.1686Neighbours37BLASTN+3205333.gbk
253295008*331838323376Island text1.4882824.39235.7473Neighbours21BLASTN3295008.gbk
263659500367720817709Island text1.6700123.483144.2502Neighbours21BLASTN3659500.gbk
273815690*383595920270Island text2.394326.268945.2202Neighbours37BLASTN+3815690.gbk
283881000*390025719258Island text3.7188329.170750.802Neighbours21BLASTN+3881000.gbk
293972751399188119131Island text1.5076724.914934.9129Neighbours21BLASTN+3972751.gbk
304159406*418211822713Island text1.5731726.240322.3901Neighbours21BLASTN+4159406.gbk
314203775*423588632112Island text1.6628627.938335.3327Neighbours37BLASTN+4203775.gbk
324270949*430303232084Island text2.5142526.394545.176Neighbours37BLASTN+4270949.gbk
334323370*437923955870Island text2.2666234.451439.9984Neighbours37BLASTN+4323370.gbk
344490435*451603425600Island text3.4478825.332948.7405Neighbours344BLASTN4490435.gbk
354535000455520720208Island text1.6203823.903941.5905Neighbours21BLASTN+4535000.gbk
364871875*490199930125Island text2.8110826.123242.8777Neighbours21BLASTN4871875.gbk