Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016626: Burkholderia sp. YI23 plasmid byi_1p, complete sequence

NCBI: NC_016626

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia sp. strain YI23 has been identified as a Fenitrothion degrader. Isolated from a golf course soil in Yongin, Kyongggi-do, South Korea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
140008043059930520Island text1.7513424.595231.2204Neighbours11BLASTN+400080.gbk
21592781161727024490Island text1.4644322.738321.1292Neighbours11BLASTN+1592781.gbk
31669477*169159922123Island text1.6531623.645417.9999Neighbours11BLASTN+1669477.gbk
41699500*174609946600Island text1.633924.302324.6396Neighbours11BLASTN+1699500.gbk
51751159177610024942Island text1.6417823.214719.1249Neighbours11BLASTN+1751159.gbk
61781956181659934644Island text1.8383225.899925.0991Neighbours11BLASTN+1781956.gbk
71825845*186275836914Island text1.7633225.276618.2422Neighbours11BLASTN+1825845.gbk
81939704196499925296Island text1.5658821.174515.5454Neighbours11BLASTN1939704.gbk