Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016622: Azospirillum lipoferum 4B, complete genome

NCBI: NC_016622

Host Lineage: Azospirillum lipoferum; Azospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Azospirillum is a bacteria belonging to the order Rhodospirillales, associated with roots of monocots, including important crops, such as wheat, corn and rice. Azospirillum is the primary commercial phytostimulator inoculant for cereals worldwide. Azospirillum lipoferum 4B has been isolated from a rice field of Camargue (South of France) in 1982 and has been studied for its high efficiency in nitrogen fixation and for its successful properties of rice colonization and growth promotion.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
182418*10823625819Island text2.6817232.688120.8629Neighbours11BLASTN+82418.gbk
217000019209922100Island text1.5898722.123.2854Neighbours11BLASTN170000.gbk
328263130256219932Island text1.5390919.909216.4413Neighbours11BLASTN+282631.gbk
452768855417426487Island text2.4146719.960426.5651Neighbours11BLASTN+527688.gbk
51599681*163178732107Island text1.488216.275525.2467Neighbours11BLASTN+1599681.gbk