Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016616: Dechlorosoma suillum PS chromosome, complete genome

NCBI: NC_016616

Host Lineage: Azospira oryzae; Azospira; Rhodocyclaceae; Rhodocyclales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Host, Soil; Isolation: sediment, swine waste primary lagoon; Temp: Mesophile; Temp: 37C. Azospira oryzae (also called Dechlorosoma suillum) is a diazotrophic endophyte associated with roots of gramineae such as Kallar grass or several species of rice.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
149388*8304033653Island text2.6525228.611345.7166Neighbours11BLASTN49388.gbk
2134449*17459940151Island text4.3711240.136230.0499Neighbours11BLASTN134449.gbk
3760145*78817628032Island text3.3809441.498128.6935Neighbours11BLASTN+760145.gbk
491575595220636452Island text4.9649937.567425.2825Neighbours11BLASTN+915755.gbk
51091606113996048355Island text3.8508835.352126.7422Neighbours11BLASTN+1091606.gbk
61182125120209919975Island text2.243725.407333.7435Neighbours11BLASTN+1182125.gbk
71233555*125669423140Island text1.7809324.398124.6254Neighbours11BLASTN+1233555.gbk
81336000*135969023691Island text1.6573125.817736.1189Neighbours11BLASTN1336000.gbk
91534983156219827216Island text3.92732.402648.1778Neighbours11BLASTN1534983.gbk
101861852188741425563Island text2.235728.343831.0075Neighbours11BLASTN1861852.gbk
112112211214859936389Island text2.4655126.690230.9142Neighbours11BLASTN+2112211.gbk
122219486*224275823273Island text4.1194632.161239.9582Neighbours11BLASTN+2219486.gbk
132426893244626519373Island text3.9855535.438127.0666Neighbours11BLASTN2426893.gbk
142644883266892624044Island text2.598225.550219.9537Neighbours11BLASTN+2644883.gbk
152699350275335554006Island text2.0808827.787636.5209Neighbours11BLASTN+2699350.gbk
162768053279814930097Island text1.8370928.190918.7006Neighbours11BLASTN+2768053.gbk
172997348*304995452607Island text2.26626.491729.822Neighbours11BLASTN+2997348.gbk
183585435*361010224668Island text2.3427529.760321.9032Neighbours111BLASTN+3585435.gbk