Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016613: Vibrio sp. EJY3 chromosome 1, complete sequence

NCBI: NC_016613

Host Lineage: Vibrio; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: The Vibrio sp. EJY3 can grow using 3,6-anhydrogalactose as a sole carbon source. Using this competency, the expense of carbon source for industrial products could be reduced.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122147627109749622Island text1.7644535.697359.2307Neighbours21BLASTN221476.gbk
21159980118209922120Island text2.8354730.831727.8538Neighbours21BLASTN+1159980.gbk
31805907182843222526Island text2.2810227.59319.838Neighbours21BLASTN+1805907.gbk
41877688190016822481Island text2.0250929.413917.6757Neighbours21BLASTN1877688.gbk
51960811198109920289Island text2.4459327.766311.9138Neighbours21BLASTN+1960811.gbk
62103792212683123040Island text1.6110630.919130.8513Neighbours21BLASTN+2103792.gbk
72139276215983520560Island text1.8295328.626625.472Neighbours21BLASTN2139276.gbk
82160356217913618781Island text1.6096829.042328.368BLASTN+2160356.gbk
92596464261461818155Island text1.5063537.986428.0454Neighbours21BLASTN+2596464.gbk
102628843264661617774Island text1.7062128.699536.8193Neighbours21BLASTN+2628843.gbk
112759908278828628379Island text1.821928.036817.5174Neighbours21+2759908.gbk