Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016612: Klebsiella oxytoca KCTC 1686 chromosome, complete genome

NCBI: NC_016612

Host Lineage: Klebsiella oxytoca; Klebsiella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This bacterium can cause spontaneous infectious spondylodiscitis (SIS), an uncommon cause of low back pain in adults, but most commonly described in children. This species can be differentiated from Klebsiella pneumoniae by its inability to produce indole from tryptophan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1284516694238492Island text3.2864146.051824.7248Neighbours41BLASTN+28451.gbk
217886420204323180Island text1.4932531.207416.4027Neighbours51BLASTN+178864.gbk
336141738468723271Island text1.5749234.192625.332Neighbours41BLASTN+361417.gbk
444339846259919202Island text1.5014736.338820.8765Neighbours51BLASTN443398.gbk
5477407*50973932333Island text2.422338.880822.9906Neighbours51BLASTN+477407.gbk
6627118*64753820421Island text1.5350730.778824.4777Neighbours51BLASTN+627118.gbk
71790256180909918844Island text1.8891738.310848.0287BLASTN1790256.gbk
81840325187075130427Island text1.6395634.563553.6454Neighbours51BLASTN+1840325.gbk
92009927*204543735511Island text1.7274337.1256.6391Neighbours41BLASTN+2009927.gbk
102223357224623022874Island text1.6592635.832153.6626Neighbours51BLASTN+2223357.gbk
112902628294479042163Island text1.6547934.550346.4044Neighbours51BLASTN+2902628.gbk
123087615*310784020226Island text1.5590434.651636.8072Neighbours41BLASTN+3087615.gbk
133314846335577440929Island text2.0545835.201824.3273Neighbours41BLASTN+3314846.gbk
143361802*338736725566Island text2.8338140.921225.2989Neighbours41BLASTN+3361802.gbk
153803130*383709933970Island text1.9073134.308155.3843Neighbours41BLASTN+3803130.gbk
163843358*387407230715Island text1.4904130.33220.3496Neighbours41BLASTN+3843358.gbk
174119410414383724428Island text1.7518234.375651.1634Neighbours41BLASTN+4119410.gbk
184823529484615822630Island text1.5373631.336733.9698Neighbours51BLASTN4823529.gbk
195208936*523508926154Island text1.5813331.613336.1585Neighbours51BLASTN+5208936.gbk
205231065*528081449750Island text1.6969932.824231.2753Neighbours41BLASTN+5231065.gbk
215296076*532672030645Island text1.9818134.620723.2384Neighbours41BLASTN5296076.gbk
225391706542859936894Island text1.9529936.07325.7903Neighbours41BLASTN+5391706.gbk
235600177562555125375Island text2.0397536.490329.4681Neighbours51BLASTN5600177.gbk