Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016610: Tannerella forsythia ATCC 43037 chromosome, complete genome

NCBI: NC_016610

Host Lineage: Tannerella forsythia; Tannerella; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism is a key agent in the progression of periodontal disease and is involved in bone loss and loss of attachment of teeth. The pathogenic factors involved in this are poorly understood. Unlike other periodontal organism such as Porphyromonas gingivalis and Prevotella intermedia, this organism is difficult to culture and the prevalence of the organism in periodontal disease may be underestimated. This organism is synergistic with Porphyromonas gingivalis, and the presence of both accelerates progression of the disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161661*12118059520Island text3.3908734.99924.2699Neighbours21BLASTN+61661.gbk
235794238047722536Island text3.3250132.578419.2776Neighbours34357942.gbk
338300040030717308Island text3.269231.940115.2942Neighbours330383000.gbk
460996163159921639Island text1.5427435.29145.7668609961.gbk
572612875178225655Island text2.0841733.900228.2188Neighbours21BLASTN+726128.gbk
679590381752521623Island text2.5770235.708112.81Neighbours312BLASTN795903.gbk
7932746*95574623001Island text1.602833.967717.6605Neighbours34+932746.gbk
81138995116364724653Island text2.3899832.77319.7832Neighbours21BLASTN1138995.gbk
91310275136459954325Island text3.4043636.14224.1452Neighbours327BLASTN+1310275.gbk
101574699*159359118893Island text1.7816141.914940.4519BLASTN1574699.gbk
111805126*182723422109Island text2.846933.436723.4864Neighbours34BLASTN+1805126.gbk
121974527*199433019804Island text3.4784134.484422.117Neighbours330BLASTN1974527.gbk
132077603*211586438262Island text2.9279233.063829.7387Neighbours312BLASTN+2077603.gbk
142489415*250812718713Island text2.5642235.729217.3478Neighbours24BLASTN2489415.gbk
152605922262855822637Island text2.3385631.955320.8917Neighbours312BLASTN2605922.gbk
162880652290009919448Island text1.5683835.174534.3038+2880652.gbk
173297080*331662019541Island text1.7570238.804153.9941Neighbours34BLASTN+3297080.gbk