Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016609: Niastella koreensis GR20-10 chromosome, complete genome

NCBI: NC_016609

Host Lineage: Niastella koreensis; Niastella; Chitinophagaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Country: Korea; Environment: Soil, Fresh water; Isolation: Soil cultivated with Korean ginseng; Yeongju; Temp: Psychrophile. Niastella koreensis is a soil bacterium which is motile by gliding.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1606000*62886822869Island text1.5803227.419720.9282Neighbours41BLASTN606000.gbk
270150072609924600Island text1.752428.210717.9674Neighbours21BLASTN701500.gbk
31305570133676031191Island text1.6483933.894754.6443Neighbours21+1305570.gbk
41774259*181409739839Island text2.2736933.439218.0885Neighbours24+1774259.gbk
52150863*220313152269Island text1.4727925.198922.0497Neighbours24BLASTN2150863.gbk
62224212*224576721556Island text1.7004527.103218.9589Neighbours24BLASTN+2224212.gbk
72730449275759727149Island text1.5792526.108532.0502Neighbours21+2730449.gbk
82951301*298269431394Island text1.7001627.62516.5941Neighbours21BLASTN2951301.gbk
93576490360753031041Island text2.439632.147317.9645Neighbours243576490.gbk
103835656385831122656Island text1.9089227.659725.9435Neighbours533835656.gbk
114152977*417509922123Island text1.4587828.465531.4167Neighbours24BLASTN4152977.gbk
124181654420432322670Island text1.8068430.573323.7952Neighbours41BLASTN+4181654.gbk
134209000423159922600Island text1.6125.060816.1347Neighbours244209000.gbk
144233701*428318649486Island text1.6279127.315419.754Neighbours21BLASTN+4233701.gbk
154331359*435123819880Island text1.8110630.000817.5881Neighbours24BLASTN4331359.gbk
164834378*488663952262Island text1.5289425.573514.5267Neighbours21BLASTN4834378.gbk
174997414*502364826235Island text2.0779130.045521.5359Neighbours24BLASTN+4997414.gbk
185763357579222328867Island text1.6927526.629117.2881Neighbours245763357.gbk
195802000*582461822619Island text1.5246226.709721.6966Neighbours358BLASTN5802000.gbk
205890292*594156951278Island text1.4650233.037547.9656Neighbours21BLASTN+5890292.gbk
215986500601274426245Island text2.0813227.59718.8905Neighbours21+5986500.gbk
226022778604770424927Island text1.5711128.158226.9488Neighbours21BLASTN+6022778.gbk
236136411*616413027720Island text1.610326.147518.6891Neighbours41BLASTN6136411.gbk
246177651620216724517Island text2.9876732.77620.2435BLASTN6177651.gbk
256361862*638331421453Island text1.8011332.006953.3561BLASTN6361862.gbk
266750111*679334143231Island text1.6210534.461752.3721Neighbours21BLASTN6750111.gbk
277427500745532927830Island text2.0377231.00215.8634Neighbours21+7427500.gbk
287565483759143225950Island text2.4076330.557313.1744Neighbours24BLASTN7565483.gbk
297608723*763376725045Island text1.5749225.614141.0586Neighbours21+7608723.gbk
307659853*768423024378Island text1.7389934.337218.3723Neighbours41BLASTN7659853.gbk
317819243*783909919857Island text1.6637725.498520.6517Neighbours41BLASTN+7819243.gbk
328251438*827041418977Island text1.5153127.191823.6722Neighbours24BLASTN8251438.gbk
338271000829795326954Island text1.5544124.987829.559Neighbours21BLASTN+8271000.gbk
348772011879102219012Island text1.5948924.792223.7593Neighbours248772011.gbk