Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016605: Pediococcus claussenii ATCC BAA-344 chromosome, complete genome

NCBI: NC_016605

Host Lineage: Pediococcus claussenii; Pediococcus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Pediococci are lactic acid bacteria found on plants and in many fermented foods. Pediococcus claussenii is a brewery contaminant that can cause economic loss in the brewing industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
150695*7868527991Island text3.0630327.242846.4393Neighbours21BLASTN+50695.gbk
213225315846626214Island text1.6822920.908336.7523Neighbours21BLASTN132253.gbk
323308725177318687Island text1.5081522.701835.6164Neighbours21BLASTN+233087.gbk
4272231*29527623046Island text2.1531624.215138.9336Neighbours21BLASTN272231.gbk
5766836*79254525710Island text2.9457826.772345.9743Neighbours21BLASTN+766836.gbk
61033000*105262219623Island text1.5253121.254933.5577Neighbours21BLASTN1033000.gbk
71177485*119946521981Island text2.4243132.08749.597Neighbours21BLASTN1177485.gbk