Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016604: Mycobacterium rhodesiae NBB3 chromosome, complete genome

NCBI: NC_016604

Host Lineage: Mycobacterium rhodesiae; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Country: Australia; Environment: Creosote-contaminated soil, Soil; Isolation: Estuarine sediment from Garrison Point; Temp: Mesophile. This organism was originally isolated from a case of tuberculosis although its pathogenicity to humans is in question.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1297687*33235434668Island text1.4977315.39413.1989Neighbours11BLASTN+297687.gbk
2917972*93749319522Island text1.49219.066115.7388Neighbours11BLASTN917972.gbk
31285277130820322927Island text1.4425315.977617.1275Neighbours11BLASTN1285277.gbk
42944555296933324779Island text1.5951919.827319.0163Neighbours11BLASTN+2944555.gbk
53097392*311538317992Island text1.4782920.026816.9631Neighbours11BLASTN3097392.gbk
63137694316113423441Island text1.4954415.527719.3994Neighbours11BLASTN+3137694.gbk
73184855322787543021Island text1.6361617.344122.4663Neighbours11BLASTN+3184855.gbk
84756000*477709921100Island text2.4174826.819230.4161Neighbours11BLASTN4756000.gbk
95067562*510594838387Island text2.1660524.688330.1665Neighbours11BLASTN+5067562.gbk
105228500525867530176Island text1.5141719.466128.3525Neighbours11BLASTN+5228500.gbk