Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016603: Acinetobacter calcoaceticus PHEA-2 chromosome, complete genome

NCBI: NC_016603

Host Lineage: Acinetobacter calcoaceticus; Acinetobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Acinetobacter calcoaceticus is part of the normal flora of the human skin and throat. It is an opportunistic pathogen. Originally isolated from industrial wastewater in China because of its ability to use phenol as the sole carbon source.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111156811568Island text4.1764920.38856.23097Neighbours21BLASTN1.gbk
2237564654222787Island text1.5273224.702141.8809Neighbours44BLASTN23756.gbk
33181592320377322182Island text2.381629.964745.8866Neighbours21BLASTN3181592.gbk
43259432*328027420843Island text1.635820.859731.7091Neighbours21BLASTN3259432.gbk
53475843349868322841Island text1.5690528.310933.7443BLASTN3475843.gbk