Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016602: Vibrio furnissii NCTC 11218 chromosome 1, complete sequence

NCBI: NC_016602

Host Lineage: Vibrio furnissii; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio furnissii, formerly Vibrio fluvialis biovar II, is occassionally isolated from diarrheal cases, but it has not been confirmed as the causative agent in most cases. Vibrio furnissii is a widespread, free-living, marine bacterium that is associated with crustacean zoonoses and acute gastroenteritis in humans.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1103878*15254948672Island text1.5308434.113651.0476Neighbours41BLASTN+103878.gbk
217331420659933286Island text3.9850942.040425.7661Neighbours41BLASTN+173314.gbk
31994110201574321634Island text1.9169938.918427.427Neighbours42BLASTN+1994110.gbk
42037162*206029823137Island text1.5318237.092756.6056Neighbours42BLASTN2037162.gbk
52292518231595423437Island text1.5760537.156555.9081Neighbours42BLASTN+2292518.gbk
62586044*261263026587Island text1.6703138.71956.9436Neighbours42BLASTN+2586044.gbk
72854107288043226326Island text2.258239.719128.7582Neighbours42BLASTN+2854107.gbk
83122700*315965136952Island text1.6661735.576755.2472Neighbours44BLASTN+3122700.gbk