Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016599: Owenweeksia hongkongensis DSM 17368 chromosome, complete genome

NCBI: NC_016599

Host Lineage: Owenweeksia hongkongensis; Owenweeksia; Cryomorphaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Country: China; Isolation: Sea water (sand filtered); China, Hong Kong; Temp: Mesophile. Aerobic, Gram-negative, non-fermentative, rod-shaped, motile, orange-pigmented bacterium isolated from sea-water samples collected from Port Shelter, Hong Kong, China, in August 2002. It was isolated from a sea-water sample collected from the outlet of a tank storing sand-filtered sea water that was pumped from a depth of 5 m.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114484416927524432Island text1.5816823.480136.6793Neighbours21BLASTN144844.gbk
251335753700723651Island text1.4193427.802841.2961Neighbours21BLASTN+513357.gbk
31412000143499822999Island text2.1838130.824248.5173Neighbours21BLASTN+1412000.gbk
42119631*214105821428Island text1.5318520.230433.8714Neighbours21BLASTN+2119631.gbk
52613276*263320819933Island text2.1524928.246646.2079Neighbours21BLASTN2613276.gbk
63434996*346001325018Island text1.5790524.204838.8403Neighbours21BLASTN3434996.gbk
73616204363517318970Island text1.6466422.834134.7241Neighbours21+3616204.gbk