Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016593: Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete

NCBI: NC_016593

Host Lineage: Geobacillus thermoleovorans; Geobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Thermophilic bacterium from Ulu Slim hot spring, Perak, Malaysia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135350539371840214Island text1.7261535.615346.2854Neighbours31BLASTN+353505.gbk
2416661*43809921439Island text1.6370434.537644.6865Neighbours31BLASTN+416661.gbk
359650063959943100Island text1.8016234.035142.3241Neighbours319BLASTN+596500.gbk
4762216*80324241027Island text1.7077232.74432.6512Neighbours31BLASTN+762216.gbk
586850089476726268Island text1.6701431.950229.4228Neighbours31BLASTN+868500.gbk
695683997838721549Island text1.7350332.389348.7039Neighbours31BLASTN+956839.gbk
7981500100936027861Island text2.639641.627219.8099Neighbours31BLASTN+981500.gbk
81092812112024027429Island text1.6884433.035429.8904Neighbours31BLASTN+1092812.gbk
91466226*149613729912Island text1.8234533.745448.8265Neighbours370BLASTN+1466226.gbk
101527456155495427499Island text2.3118538.349122.0128Neighbours31BLASTN+1527456.gbk
111713000*173292919930Island text1.759833.276623.2373Neighbours31BLASTN+1713000.gbk
121814500185028735788Island text2.0579339.13415.2698Neighbours370BLASTN+1814500.gbk
132015321203752322203Island text1.6030630.972424.732Neighbours31BLASTN+2015321.gbk
142370000*239311623117Island text1.8947535.17227.1349Neighbours31BLASTN+2370000.gbk
152447938248387135934Island text1.7776535.005737.9869Neighbours31BLASTN+2447938.gbk
162851243287516123919Island text1.7651234.052227.1484Neighbours31BLASTN2851243.gbk
173116145314109924955Island text1.7930934.119336.6914Neighbours31BLASTN3116145.gbk
183249767328124931483Island text1.7198729.138317.8524Neighbours31BLASTN+3249767.gbk
193402205342824426040Island text2.1732338.662729.4816Neighbours31BLASTN+3402205.gbk