Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016589: Burkholderia sp. YI23 chromosome 1, complete sequence

NCBI: NC_016589

Host Lineage: Burkholderia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Burkholderia sp. strain YI23 has been identified as a Fenitrothion degrader. Isolated from a golf course soil in Yongin, Kyongggi-do, South Korea.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118343221807234641Island text2.0184426.332421.9324Neighbours11BLASTN+183432.gbk
21064575108842323849Island text1.6382427.808926.1359Neighbours11BLASTN+1064575.gbk
32312570234413931570Island text2.3661430.59538.7712Neighbours11BLASTN+2312570.gbk
42824164286662342460Island text1.6636225.227919.6034Neighbours11BLASTN2824164.gbk
52875000*290959934600Island text2.4356429.65136.5762Neighbours11BLASTN+2875000.gbk