Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016584: Desulfosporosinus orientis DSM 765 chromosome, complete genome

NCBI: NC_016584

Host Lineage: Desulfosporosinus orientis; Desulfosporosinus; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Singapore; Isolation: Soil at pumping station; Temp: Mesophile; Temp: 30C. The genus Desulfotomaculum, which means a sausage (shaped organism) that reduces sulfur compounds, was first described in 1965. Desulfosporosinus orientis is a strictly anaerobic, chemoorganotrophic, Gram-positive bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
185543*11997434432Island text2.0769331.255351.7007Neighbours344BLASTN85543.gbk
2138348*16035922012Island text1.8679431.8848.6691Neighbours22BLASTN138348.gbk
3233486*25532321838Island text1.5550629.104746.7454BLASTN233486.gbk
443261045211219503Island text1.5431929.546143.0168Neighbours22BLASTN432610.gbk
5487613*51009922487Island text2.1738427.392422.9078Neighbours21BLASTN+487613.gbk
6593954*61370419751Island text1.83532.861149.8858Neighbours22BLASTN+593954.gbk
795400098103327034Island text4.4575429.314724.8386Neighbours21BLASTN+954000.gbk
81436710146173925030Island text1.8091837.441239.9556Neighbours22BLASTN+1436710.gbk
91583685*160856324879Island text1.7023329.01747.0233Neighbours22BLASTN+1583685.gbk
101714507173559921093Island text1.5496732.921943.6326Neighbours22BLASTN1714507.gbk
111912000193424222243Island text1.5064532.946337.2579Neighbours22BLASTN+1912000.gbk
121998000*204884250843Island text2.0119534.865847.559Neighbours22BLASTN+1998000.gbk
132244966*227130326338Island text1.7808639.491344.1492Neighbours23BLASTN+2244966.gbk
143040887306012419238Island text1.5196231.851939.676Neighbours22BLASTN3040887.gbk
153617439*364059923161Island text2.4060432.298552.2297Neighbours22BLASTN3617439.gbk
163645245366393718693Island text1.5984827.559646.7414Neighbours22BLASTN+3645245.gbk
173826300384459918300Island text1.5098627.784526.3674Neighbours22BLASTN3826300.gbk
183847663387060922947Island text1.5794332.074634.1057Neighbours316BLASTN3847663.gbk
194325964434809922136Island text1.5480126.8349.8904Neighbours22BLASTN4325964.gbk
204363382438846625085Island text1.5042128.520234.7606Neighbours21BLASTN+4363382.gbk
214478200449630118102Island text1.4842231.827644.7984Neighbours22BLASTN4478200.gbk
224601645462735925715Island text2.119537.858332.5196Neighbours23BLASTN4601645.gbk
234860360*489532334964Island text1.5328.147647.0937Neighbours22BLASTN4860360.gbk
244905310*492576620457Island text1.6365628.362142.9204Neighbours22BLASTN4905310.gbk
254961688498955527868Island text1.7007330.480737.576Neighbours22BLASTN4961688.gbk
265305417532743222016Island text1.5858829.366140.1318Neighbours21BLASTN+5305417.gbk
275388500541691228413Island text1.5966533.489733.9055Neighbours22BLASTN+5388500.gbk
285420823*544439223570Island text1.5657427.662933.4145Neighbours22BLASTN+5420823.gbk
295625975565028524311Island text1.6072330.091241.6887Neighbours22BLASTN+5625975.gbk