Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016510: Flavobacterium columnare ATCC 49512 chromosome, complete genome

NCBI: NC_016510

Host Lineage: Flavobacterium columnare; Flavobacterium; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Isolated in 1987 from a skin lesion of a brown trout fry in France. Fish pathogen. Purified genomic DNA obtained from ATCC 49512 F. columnare is considered ubiquitous in the warmwater aquatic environment, and it is the causative agent of columnaris disease in fish. Columnaris disease is common throughout the world and infects most species of freshwater fish, including aquaculture species, wild fish populations, and ornamental fish.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
143433233227990Island text1.704918.995127.5331Neighbours21BLASTN+4343.gbk
2871000*89126920270Island text2.9746322.616935.8862Neighbours21BLASTN871000.gbk
31072709111932546617Island text2.6126424.637945.0122Neighbours21BLASTN1072709.gbk
41749967177290522939Island text1.6976220.181835.856Neighbours21BLASTN1749967.gbk
51828978*184835419377Island text1.7335521.35331.4923Neighbours21BLASTN+1828978.gbk
61874942*189830123360Island text1.6316317.722529.76Neighbours21BLASTN+1874942.gbk
71958453197838719935Island text3.2509522.753737.6405Neighbours21BLASTN+1958453.gbk
81999621*202002620406Island text1.6844517.464131.6726Neighbours21BLASTN1999621.gbk
92049500207436124862Island text1.4118819.5121.7018Neighbours21BLASTN2049500.gbk
102175000*219545720458Island text1.6286317.664829.0291Neighbours21BLASTN+2175000.gbk
112312481233218619706Island text1.8831918.552431.9385Neighbours21+2312481.gbk
122426150*247488948740Island text1.5920322.042533.9918Neighbours21BLASTN+2426150.gbk
132579127*261659937473Island text1.948517.671936.2316Neighbours21BLASTN+2579127.gbk
142750354*276959919246Island text1.5723816.795419.9354Neighbours21BLASTN2750354.gbk
152856000287934023341Island text1.7756222.579227.8213Neighbours21BLASTN+2856000.gbk
162991687301424522559Island text2.1824523.960444.8613Neighbours21BLASTN+2991687.gbk