Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016148: Thermovirga lienii DSM 17291 chromosome, complete genome

NCBI: NC_016148

Host Lineage: Thermovirga lienii; Thermovirga; Synergistaceae; Synergistales; Synergistetes; Bacteria

General Information: Country: Norway; Environment: Oil fields, Fresh water; Isolation: Production water from an oil well, Norway; Temp: Thermophile; Temp: 58C. Thermovirga lienii was isolated from an oil well in the North Sea.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114101116080119791Island text1.9424231.690845.8338BLASTN+141011.gbk
2463840*49611832279Island text2.6378134.735252.2308BLASTN+IslandViewer 463840.gbk
3576946*60069323748Island text1.7072930.287953.7977BLASTN+576946.gbk
4678175*69737519201Island text1.722231.876742.5569BLASTN678175.gbk
5698388*71712218735Island text1.6299330.417150.0244BLASTN+698388.gbk
6951446*97361422169Island text2.0680630.60451.8171Neighbours378BLASTN+951446.gbk
71021138105350032363Island text1.6334434.170354.6128Neighbours378BLASTN+1021138.gbk
81105669*114678841120Island text2.2007732.124851.5435Neighbours378BLASTN+1105669.gbk
91175999*119597119973Island text1.6659629.968251.5486Neighbours378BLASTN1175999.gbk
101877711*192522947519Island text1.8793330.258644.9921Neighbours22BLASTN+IslandViewer 1877711.gbk