Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016147: Pseudoxanthomonas spadix BD-a59 chromosome, complete genome

NCBI: NC_016147

Host Lineage: Pseudoxanthomonas spadix; Pseudoxanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: Location: South Korea; Isolation source: BTEX contaminated soil. Capable of metabolizing all six BTEX (benzene, toluene, ethylbenzene, and o-, m-, and p-xylene) compounds. Isolated from gasoline-contaminated sediment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115122417959928376Island text1.8091525.116136.4481Neighbours11BLASTN+151224.gbk
230727533176724493Island text1.8444721.351321.627Neighbours11BLASTN+307275.gbk
351381954007926261Island text1.433519.558622.1342Neighbours11BLASTN513819.gbk
4586433*60844722015Island text1.6852220.160516.2071Neighbours11BLASTN+586433.gbk
562366664876125096Island text1.705621.77814.542Neighbours11BLASTN+623666.gbk
6730810*75470523896Island text1.7221119.167629.1565Neighbours11BLASTN730810.gbk
71435000145559920600Island text2.0020320.019229.2632Neighbours11BLASTN1435000.gbk
81672482169656224081Island text1.3863417.588812.6507Neighbours11BLASTN+1672482.gbk
91788219*181309924881Island text2.4450625.463323.8466Neighbours11BLASTN+1788219.gbk
101825827184850022674Island text1.5148220.647818.0432Neighbours11BLASTN1825827.gbk
111961000199073629737Island text2.3626925.790421.277Neighbours11BLASTN1961000.gbk
122266419228520418786Island text1.6527717.779322.9291Neighbours11BLASTN+2266419.gbk
132337244*238309945856Island text1.9940721.444317.584Neighbours11BLASTN2337244.gbk
142471451*249020618756Island text1.6579617.564419.7588Neighbours11BLASTN2471451.gbk
152820232285393633705Island text2.752223.539427.875Neighbours11BLASTN+2820232.gbk
162964178298209917922Island text1.5156717.4529.22768Neighbours11BLASTN+2964178.gbk
173023180304709923920Island text2.0485523.439231.3343Neighbours11BLASTN+3023180.gbk
183349272*337170522434Island text1.8060621.226211.8067Neighbours11BLASTN3349272.gbk