Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016146: Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR

NCBI: NC_016146

Host Lineage: Blattabacterium; Blattabacterium; Blattabacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Blattabacterium is a flavobacterial endosymbiont of nearly all cockroaches and the termite Mastotermes darwiniensis and can use nitrogenous wastes in essential amino acid and vitamin biosynthesis. M. darwiniensis is a basal, extant termite that solely retains Blattabacterium, which would show evidence of relaxed selection if it is being supplanted by the gut microbiome.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1360455*39094130487Island text2.9539116.053118.2633Neighbours21BLASTN360455.gbk
2423190*44665123462Island text1.7277611.418821.1369Neighbours21BLASTN423190.gbk