Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016114: Streptomyces flavogriseus ATCC 33331 chromosome, complete genome

NCBI: NC_016114

Host Lineage: Streptomyces pratensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Soil; Isolation: Soil; Temp: Mesophile. The genus Streptomyces consists of soil and water Gram positive filamentous bacteria well known for their ability to produce complex secondary metabolites including many antibiotics. Additionally they undergo complex multicellular development, with spores germinating to form a branched, multinucleoid substrate mycelium, which then produces an aerial mycelium which septates into uninucleoid spores. Streptomyces flavogriseus is an aerobic, Gram-positive bacterium isolated from soil. This organism produces cellulases and xyanases that are able to degrade cellulose and xylan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112120921209Island text1.6720615.491218.431Neighbours11BLASTN+IslandViewer 1.gbk
2648422*68913540714Island text2.3153216.53415.4391Neighbours11BLASTN+IslandViewer 648422.gbk
390750092913321634Island text1.6564213.493222.4028Neighbours11BLASTN907500.gbk
41435436145848123046Island text1.4958713.804912.1917Neighbours11BLASTN+1435436.gbk
51474000152083446835Island text2.015414.433115.5874Neighbours11BLASTNIslandViewer 1474000.gbk
61710938176711456177Island text1.3581417.278730.5762Neighbours11BLASTN1710938.gbk
72612465263665324189Island text3.2755417.307321.929Neighbours11BLASTN+2612465.gbk
82960989*298522324235Island text1.5135516.324227.2993Neighbours11BLASTN2960989.gbk
93008500*303489026391Island text1.6398516.928921.453Neighbours11BLASTN+IslandViewer 3008500.gbk
103275004*329822623223Island text2.6534117.837716.5413Neighbours11BLASTN+3275004.gbk
113439273346736528093Island text1.5779413.387622.6093Neighbours11BLASTN+IslandViewer 3439273.gbk
123575955*359709921145Island text3.8945820.059528.7443Neighbours11BLASTN3575955.gbk
133655005*368252227518Island text2.0311913.879611.6315Neighbours11BLASTN3655005.gbk
143711000*373055419555Island text2.8079313.778816.1664Neighbours11BLASTN3711000.gbk
153938721396342924709Island text1.7445113.387617.9833Neighbours11BLASTN3938721.gbk
164210173423798127809Island text1.579612.557818.699Neighbours11BLASTN+4210173.gbk
174333390*435336919980Island text1.5784315.710126.477Neighbours11BLASTNIslandViewer 4333390.gbk
184614924*463995525032Island text3.7341318.477622.3101Neighbours11BLASTN+4614924.gbk
194922630*494133918710Island text3.3511718.702821.4198Neighbours11BLASTN4922630.gbk
205539021*556787428854Island text1.5999712.80721.5252Neighbours11BLASTN+5539021.gbk
217116141713459918459Island text4.5282220.775428.8242Neighbours11BLASTN+7116141.gbk
227252500727522022721Island text1.8420415.59231.6852Neighbours11BLASTN+7252500.gbk
237282882734699964118Island text1.450913.606520.6481Neighbours11BLASTN+IslandViewer 7282882.gbk