Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016113: Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequence

NCBI: NC_016113

Host Lineage: Streptomyces cattleya; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces cattleya, a producer of the antibiotics thienamycin and cephamycin C, is one of the rare bacteria known to synthesize fluorinated metabolites. Gram-positive bacterium originally isolated from soil. The bacterium Streptomyces cattleya has become an organism of interest due to its ability to produce various antibiotics (thienamycin, cephamycin C, penicillin N) and to excrete the fluorinated antibiotic 4-fluorothreonine when cultivated in the presence of fluorine.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1115003385522356Island text2.0741113.272712.0978Neighbours11BLASTN+11500.gbk
280326882288619619Island text1.5707713.451510.522Neighbours11BLASTN+803268.gbk
388758290947221891Island text1.4795413.74646.04824Neighbours8BLASTN+887582.gbk
4994469101411019642Island text2.3766112.827814.5737Neighbours11BLASTN+994469.gbk
51143580*116674523166Island text1.7395312.256811.329Neighbours11BLASTN+1143580.gbk
61312052133114319092Island text1.5799812.664211.9198Neighbours8BLASTN+1312052.gbk