Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016112: Methylomicrobium alcaliphilum chromosome, complete genome

NCBI: NC_016112

Host Lineage: Methylomicrobium alcaliphilum; Methylomicrobium; Methylococcaceae; Methylococcales; Proteobacteria; Bacteria

General Information: Methanotroph, Ammonia oxidation, Thiosulfate oxidation. Haloalkaliphilic methanotrophic bacterium. Halotolerant, alkaliphilic, obligate methanotrophic, Gram-negative bacterium isolated from moderately saline soda lakes in Tuva (Central Asia)



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1576418267225032Island text1.8072131.123525.3533BLASTN57641.gbk
236472338376919047Island text1.7464134.030644.851Neighbours46BLASTN+364723.gbk
356257058620123632Island text1.5074229.289327.9206Neighbours320BLASTN562570.gbk
480625683243526180Island text1.6285335.185145.9821Neighbours42BLASTN806256.gbk
51330500*135459924100Island text2.0687234.610832.1794Neighbours319BLASTN+IslandViewer 1330500.gbk
61735044*176265927616Island text1.9991333.443120.947Neighbours46BLASTN+1735044.gbk
72301023*232247121449Island text1.5659730.822730.0898BLASTN2301023.gbk
82903767292609922333Island text1.5816128.614413.6832Neighbours46BLASTN2903767.gbk
93103716313959935884Island text1.6396137.566923.5412Neighbours42BLASTN+IslandViewer 3103716.gbk
103190891321064319753Island text2.9048137.765727.4959BLASTNIslandViewer 3190891.gbk
113840053*389764157589Island text1.5901926.611141.1987BLASTN+3840053.gbk