Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016111: Streptomyces cattleya NRRL 8057, complete genome

NCBI: NC_016111

Host Lineage: Streptomyces cattleya; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces cattleya, a producer of the antibiotics thienamycin and cephamycin C, is one of the rare bacteria known to synthesize fluorinated metabolites. Gram-positive bacterium originally isolated from soil. The bacterium Streptomyces cattleya has become an organism of interest due to its ability to produce various antibiotics (thienamycin, cephamycin C, penicillin N) and to excrete the fluorinated antibiotic 4-fluorothreonine when cultivated in the presence of fluorine.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111867518675Island text1.6982914.03829.30686Neighbours11BLASTN+1.gbk
213444418099846555Island text2.4320218.540613.3788Neighbours11BLASTN+134444.gbk
316794919378625838Island text1.9819914.624925.332Neighbours11BLASTN167949.gbk
440985243491225061Island text1.7954513.64611.1037Neighbours11BLASTN409852.gbk
548111554162660512Island text1.5860115.2727.6822Neighbours11BLASTN481115.gbk
6581143*61156830426Island text1.704516.059711.7432Neighbours11BLASTN+581143.gbk
761372964307529347Island text2.1301416.53921.4238Neighbours11BLASTN+613729.gbk
863981968018140363Island text2.1478416.358825.5657Neighbours11BLASTN+639819.gbk
969525071322617977Island text2.0527314.673512.8761Neighbours11BLASTN695250.gbk
10986936100616519230Island text4.5794821.184922.5097Neighbours11BLASTN+986936.gbk
111484424150259918176Island text1.6470415.901620.8567Neighbours11BLASTN+1484424.gbk
121546505157137224868Island text3.984321.183125.7396Neighbours11BLASTN+1546505.gbk
131766010183535169342Island text2.0770715.12657.07151Neighbours11BLASTN+IslandViewer 1766010.gbk
141904859192295118093Island text1.9021316.27611.406Neighbours11BLASTNIslandViewer 1904859.gbk
152257166*227775220587Island text4.3618121.731623.3841Neighbours11BLASTN2257166.gbk
162376245239409917855Island text1.6377415.570318.5711Neighbours11+2376245.gbk
172402891*244144338553Island text3.7202920.543223.0357Neighbours11BLASTN+2402891.gbk
182651500*267437322874Island text1.6631914.823411.4344Neighbours11BLASTN+IslandViewer 2651500.gbk
192892391291059918209Island text1.5697215.685813.8628Neighbours11BLASTN2892391.gbk
202912962293327120310Island text3.4111917.314.277Neighbours11BLASTN+2912962.gbk
212932495295104618552Island text1.8604916.813610.0378Neighbours11BLASTN+2932495.gbk
222952338297062618289Island text3.6787220.046926.1165Neighbours11BLASTN+IslandViewer 2952338.gbk
233026000*304830322304Island text1.9186215.108212.1757Neighbours11BLASTN3026000.gbk
243052494*309181539322Island text1.7350515.728416.4007Neighbours11BLASTN+3052494.gbk
253308310*333137023061Island text1.6464914.09928.1155Neighbours11BLASTN+3308310.gbk
263486000*350907523076Island text1.7743814.58237.17505Neighbours11BLASTN3486000.gbk
273577572*360271125140Island text1.5465114.0238.85004Neighbours11BLASTN+3577572.gbk
283659269368284023572Island text2.9900321.940713.2711Neighbours11BLASTN+3659269.gbk
293736254*375569219439Island text1.5983815.276214.2697Neighbours11BLASTN3736254.gbk
303769818*379052520708Island text1.4747817.904910.19Neighbours11BLASTN3769818.gbk
313865823*388916123339Island text2.2665119.080317.5157Neighbours11BLASTN+3865823.gbk
324003290402122617937Island text5.1077919.751425.5334Neighbours11BLASTN+4003290.gbk
334115097413573420638Island text1.5234815.260217.1093Neighbours11BLASTN+IslandViewer 4115097.gbk
344207110422567818569Island text1.5388416.117521.4094Neighbours11BLASTN+4207110.gbk
354245876426814622271Island text1.5106916.204617.8442Neighbours8BLASTN+4245876.gbk
364588021461337525355Island text1.5405515.836526.4882Neighbours11BLASTN+4588021.gbk
374613599*463398220384Island text1.8337214.770812.2609Neighbours11BLASTN4613599.gbk
384645145466868523541Island text2.1725914.931921.982Neighbours11BLASTN4645145.gbk
395181475520643224958Island text1.7867514.97457.94859Neighbours11BLASTN+5181475.gbk
405369414*539255623143Island text1.4451620.12418.3214Neighbours11BLASTN+5369414.gbk
415515462553356018099Island text2.2219917.53514.4247Neighbours11BLASTN+5515462.gbk
426175975619712621152Island text1.8971416.044513.9623Neighbours11BLASTN6175975.gbk
436222461625159929139Island text1.5777615.892510.5555Neighbours11BLASTN+IslandViewer 6222461.gbk