Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016109: Kitasatospora setae KM-6054, complete genome

NCBI: NC_016109

Host Lineage: Kitasatospora setae; Kitasatospora; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium, isolated from soil in Japanand and produces the antibiotics setamycin and bafilomycin B1. Antibiotic-producing actinomycete.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111834618346Island text2.0538614.296624.3757Neighbours11BLASTNIslandViewer 1.gbk
262000*11343551436Island text1.7772114.76525.2388Neighbours11BLASTN+IslandViewer 62000.gbk
311699514550728513Island text2.302317.851429.5389Neighbours11BLASTN+116995.gbk
4327826*35302425199Island text1.5890916.22697.43087Neighbours11BLASTN+327826.gbk
560382962634422516Island text1.5129514.542817.4321Neighbours11BLASTN+IslandViewer 603829.gbk
6785819*80756421746Island text1.8599513.450510.5768Neighbours11BLASTN785819.gbk
7954538*97770623169Island text1.8556117.471619.5168Neighbours11BLASTNIslandViewer 954538.gbk
81305368132741422047Island text1.5840216.53727.8884Neighbours11BLASTN+1305368.gbk
91445369146733321965Island text1.7377915.309926.0903Neighbours11BLASTN1445369.gbk
101775259179807322815Island text4.4101120.675826.8046Neighbours11BLASTN+1775259.gbk
112065326208809922774Island text2.2237713.114613.2638Neighbours11BLASTN+IslandViewer 2065326.gbk
122473126249109917974Island text4.7581419.942326.8052Neighbours11BLASTN+IslandViewer 2473126.gbk
132629301264859919299Island text1.7787511.256719.235Neighbours11BLASTN+IslandViewer 2629301.gbk
142938000*295515017151Island text1.9821613.14149.83067Neighbours11BLASTN+2938000.gbk
153364844338763422791Island text1.6336113.45414.3415Neighbours11BLASTN3364844.gbk
163525588*357545349866Island text1.5517715.541316.4438Neighbours11BLASTN+3525588.gbk
173591401*365894367543Island text4.2308718.252428.3094Neighbours11BLASTN+IslandViewer 3591401.gbk
183875617389809922483Island text3.8752218.556628.2077Neighbours11BLASTN3875617.gbk
193963189*399887535687Island text1.6697414.664420.5872Neighbours11BLASTNIslandViewer 3963189.gbk
204088259*410793419676Island text1.585416.552421.4302Neighbours11BLASTN4088259.gbk
214199839*423472734889Island text1.9380114.770314.2477Neighbours11BLASTN+IslandViewer 4199839.gbk
224241591426496123371Island text1.7283913.354212.3158Neighbours11BLASTN+IslandViewer 4241591.gbk
234455158447858323426Island text2.5686419.69414.086Neighbours11BLASTN+4455158.gbk
244485925*451645030526Island text1.561213.18911.798Neighbours11BLASTNIslandViewer 4485925.gbk
254581467460294821482Island text1.5466612.913924.4096Neighbours11BLASTN4581467.gbk
264645905466728021376Island text1.3782714.421219.6613Neighbours11BLASTN+4645905.gbk
274753493477309919607Island text1.4689613.600415.8606Neighbours11BLASTN+IslandViewer 4753493.gbk
285290000*533661246613Island text1.928615.311312.994Neighbours11BLASTN+IslandViewer 5290000.gbk
295455060*547650121442Island text2.0253413.879320.5293Neighbours11BLASTN+5455060.gbk
305543112556609922988Island text1.9998513.071915.6231Neighbours11BLASTN5543112.gbk
315768000*581224344244Island text2.3865914.992714.9762Neighbours11BLASTN+IslandViewer 5768000.gbk
326507076*653005822983Island text3.4849917.773121.5002Neighbours8BLASTNIslandViewer 6507076.gbk
336640000666209922100Island text1.540617.532216.2961Neighbours8BLASTN6640000.gbk
346816000683940623407Island text1.5775915.738117.8487Neighbours11BLASTN+IslandViewer 6816000.gbk
357445603*747185826256Island text1.4528218.658818.0777Neighbours11BLASTN7445603.gbk
367631165765409922935Island text2.31413.875415.1209Neighbours11BLASTN+IslandViewer 7631165.gbk
378256000827866422665Island text4.0104119.662627.3958Neighbours11BLASTN+8256000.gbk
388635989865474118753Island text4.1614220.233525.3673Neighbours11BLASTN+IslandViewer 8635989.gbk
398664974*871485249879Island text4.1401718.968630.9234Neighbours11BLASTN+IslandViewer 8664974.gbk
408761557878499923443Island text3.74920.101627.9847Neighbours11BLASTN+IslandViewer 8761557.gbk