Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016077: Acidaminococcus intestini RyC-MR95 chromosome, complete genome

NCBI: NC_016077

Host Lineage: Acidaminococcus intestini; Acidaminococcus; Acidaminococcaceae; Selenomonadales; Firmicutes; Bacteria

General Information: The organisms of the genus Acidaminococcus are normal members of microbiota of human and warm-blooded animals, and are occasionally involved in opportunistic human infections



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
185453248623942Island text1.6243134.293952.3054BLASTN+8545.gbk
211324613701723772Island text1.581134.557454.7752BLASTN113246.gbk
3388941*40727018330Island text1.5051431.073752.281BLASTN+388941.gbk
470200072409922100Island text1.3807531.608749.3666Neighbours31BLASTN+IslandViewer 702000.gbk
5998741*106432565585Island text2.1422137.922220.8524Neighbours312BLASTN+IslandViewer 998741.gbk
61278104130309924996Island text1.6017331.568248.375Neighbours33BLASTN+IslandViewer 1278104.gbk
71388775141087722103Island text1.5985530.76940.8765BLASTN+IslandViewer 1388775.gbk
81876119*190278626668Island text2.3162735.464121.5697Neighbours23BLASTN+IslandViewer 1876119.gbk
91944000197131327314Island text1.686534.999333.245Neighbours315BLASTN+IslandViewer 1944000.gbk
102044876*206737022495Island text1.6496932.617318.5196Neighbours32BLASTN2044876.gbk