Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016070: Thermoproteus tenax Kra 1, complete genome

NCBI: NC_016070

Host Lineage: Thermoproteus tenax; Thermoproteus; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Strictly anaerobic, sulfur-dependent and hyperthermophilic crenarchaeum. Originally isolated from a solfatare in Iceland. Dissimilatory sulfate reduction.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116736219187324512Island text2.2320442.914931.8892Neighbours64BLASTN+167362.gbk
237118539483823654Island text1.382530.143527.2506Neighbours64BLASTN371185.gbk
3637739*65591618178Island text1.6902229.438223.925BLASTN637739.gbk
4719791*74309923309Island text1.6418235.378727.9156BLASTN+719791.gbk
5743255*76666623412Island text1.560630.516229.4251BLASTN743255.gbk
61178462120709728636Island text2.7429445.125338.4616BLASTN1178462.gbk
71340500*137367133172Island text1.839733.896527.5212BLASTN+1340500.gbk
81380500*140376523266Island text1.7089132.879923.7534BLASTN+1380500.gbk
91448488*147946030973Island text1.6373729.006441.2295BLASTN+1448488.gbk
101657500*168504827549Island text1.5533131.798121.04BLASTN+1657500.gbk