Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016051: Thermococcus sp. AM4 chromosome, complete genome

NCBI: NC_016051

Host Lineage: Thermococcus; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: This strain was collected from the Pacific Ocean, East Pacific Rise at a depth of 2600 meters. It was cultured at 80 degrees C in basal salts medium containing carbon monoxide in the gas phase. A marine microorganism capable of using carbon monoxide as a sole carbon and energy source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18168510572324039Island text1.9900343.665431.3274Neighbours313BLASTNIslandViewer 81685.gbk
2241438*28998048543Island text1.8510532.396644.325Neighbours313BLASTN241438.gbk
3389776*40965319878Island text1.5474633.773137.5645Neighbours313BLASTN+389776.gbk
4460624*48043019807Island text1.5931231.135735.3042Neighbours313BLASTN460624.gbk
5766683*79351826836Island text2.1532340.857641.7607Neighbours313BLASTNIslandViewer 766683.gbk
61005188*103023725050Island text1.6219135.230534.9921Neighbours313BLASTNIslandViewer 1005188.gbk
71129154*115259923446Island text1.763436.538430.6625Neighbours313BLASTN+1129154.gbk
81385490141460129112Island text2.9474447.654543.9152Neighbours313BLASTNIslandViewer 1385490.gbk
91429800145959929800Island text2.9233444.850233.195Neighbours313BLASTN1429800.gbk
101471782*149413722356Island text1.5439330.550837.7817Neighbours313BLASTN+1471782.gbk
111681076*171622335148Island text2.4105951.49935.6695Neighbours313BLASTN+IslandViewer 1681076.gbk
121803880*184746543586Island text3.4948851.975822.0617Neighbours313BLASTNIslandViewer 1803880.gbk
131849905*187252922625Island text1.5811433.30549.598Neighbours313BLASTN1849905.gbk